wiki:MolgenisServers

MOLGENIS cloud infrastructure

Introduction

We work with a Virtual Machine cloud. See MolgenisServersFaq.

List of servers

  • Most Virtual Machines are located in the gcc.rug.nl domain. For some there are more beautiful DNS entries...
  • Apache runs on port 80 and 443
  • Molgenis runs on port 8080 (either via Tomcat or standalone)
  • SSH acces via port 22 only from within certain UMCG/RUG subnets
  • MySQL access only on localhost
  • Servers are automatically updated daily at 4am
  • Backups are running daily at 3am
  • Test/Acceptance/Production servers are automatically rebooted weekly on Monday 06:30/11:00/16:00
Server Access DNS Alias App Contact DTAP
195.169.23.201 public https://molgenis01.gcc.rug.nl/
https://molgenis01.target.rug.nl/ (deprecated)
Molgenis Integration server Dennis production
195.169.23.202 public https://molgenis02.gcc.rug.nl BBMRI-ERIC Directory - Negotiator Demo Mark / Fleur acceptance
195.169.23.203 public http://www.deb-central.org/
https://molgenis03.gcc.rug.nl/
https://molgenis03.target.rug.nl/ (deprecated)
COL7A1 Bart / Joeri production
195.169.23.204 public http://www.molgenis.org/decon2
https://molgenis04.gcc.rug.nl/
https://molgenis04.target.rug.nl/ (deprecated)
Decon2 Fleur production
195.169.23.205 private https://www.molgenis.org/vkgl
https://molgenis05.gcc.rug.nl/
https://molgenis05.target.rug.nl/ (deprecated)
VKGL (Old) Mariska -
195.169.23.206 private https://molgenis06.gcc.rug.nl/
https://molgenis06.target.rug.nl/ (deprecated)
Samplesheets NGS_DNA/RNA Roan / Gerben / Marieke Production
195.169.23.207 public https://molgenis07.gcc.rug.nl/
https://molgenis07.target.rug.nl/ (deprecated)
ARVC Vd Zwaag Bart acceptance
195.169.23.208 private https://molgenis08.gcc.rug.nl/
https://molgenis08.target.rug.nl/ (deprecated)
Chromosome6 RC6-tool Mark / Mariska production
195.169.23.209 public http://molgenis.org/demo
https://molgenis09.gcc.rug.nl/
https://molgenis09.target.rug.nl/ (deprecated)
Molgenis Demo server Mark Production
Server Access DNS Alias App Contact DTAP
195.169.23.210 private https://molgenis10.gcc.rug.nl/
https://molgenis10.target.rug.nl/ (deprecated)
RD-Connect Sample Catalogue David / Mark / Marieke Production
195.169.23.211 public http://www.systemsgenetics.nl
http://molgenis11.gcc.rug.nl/
http://molgenis11.target.rug.nl (deprecated)
WordPress Pieter production
195.169.23.212 public https://molgenis12.gcc.rug.nl/
http://molgenis12.target.rug.nl/ (deprecated)
lncRNA Explorer Eric demo
195.169.23.213 - https://molgenis13.gcc.rug.nl/
https://molgenis13.target.rug.nl/ (deprecated)
Glia Open Access Database (GOAD) Dennis acceptance
195.169.23.214 public
https://molgenis14.gcc.rug.nl/
to be recycled (old IBD) - - - - - - -
195.169.23.215 public http://molgenis15.gcc.rug.nl/
http://molgenis15.target.rug.nl/ (deprecated)
http://www.nlgenome.nl/search/
GoNL DB
Some datasets need to be removed before recycling
Joeri production
195.169.23.216 public http://molgenis16.gcc.rug.nl/
https://molgenis16.gcc.rug.nl/
http://molgenis16.target.rug.nl/ (deprecated)
https://molgenis16.target.rug.nl/ (deprecated)
Palga Acceptance David Acceptance
195.169.23.217 public http://www.molgenis.org/connect
https://molgenis17.gcc.rug.nl/
https://molgenis17.target.rug.nl/
molgenis-connect server Chao Production
195.169.23.218 public https://catalogue.lifelines.nl/
https://molgenis18.gcc.rug.nl/
https://molgenis18.target.rug.nl/ (deprecated)
LifeLines Dennis production
195.169.23.219 public http://www.molgenis.org/sorta
https://molgenis19.gcc.rug.nl/
https://molgenis19.target.rug.nl/ (deprecated)
SORTA Chao Production
Server Access DNS Alias App Contact DTAP
195.169.23.220 public http://molgenis20.gcc.rug.nl/
http://molgenis20.target.rug.nl (deprecated)
GAVIN Joeri Fleur Bart production
195.169.23.221 - https://molgenis21.gcc.rug.nl/
https://molgenis21.target.rug.nl/ (deprecated)
Production BBMRI eric Mariska Production
195.169.23.222 public http://www.molgenis.org/humanpathwaydb/
http://molgenis22.gcc.rug.nl:8080/humanpathwaydb/
http://molgenis22.target.rug.nl:8080/humanpathwaydb/ (deprecated)
Human Pathway DBs Miranda production
195.169.23.223 public http://molgenis23.gcc.rug.nl/ SORTA RD/connect Chao / David production
195.169.23.224 public http://molgenis24.gcc.rug.nl/
http://molgenis24.target.rug.nl/ (deprecated)
BiobankConnect Chao production
195.169.23.225 public www.mvid-central.org
http://molgenis25.gcc.rug.nl/
http://molgenis25.target.rug.nl/ (deprecated)
MVID Joeri / Pieter production
195.169.23.226 private https://molgenis26.gcc.rug.nl/downloads/
https://molgenis26.target.rug.nl/downloads/ (deprecated)
Static data release downloads Morris / Joeri production
195.169.23.227 public http://molgenis27.gcc.rug.nl/
http://molgenis27.target.rug.nl/
Gene Network Juha & Patrick Production
195.169.23.228 public www.voedingsdagboek.nl
http://molgenis28.target.rug.nl/celiacresearch/
Voedingsdagboek et al. / Celiac Research Martijn production
195.169.23.229 public www.c2cards.nl
www.molgenis.org/c2cards/
http://molgenis29.target.rug.nl/c2cards/
C2Cards Human Miranda production
Server Access DNS Alias App Contact DTAP
195.169.23.230 private http://molgenis30.gcc.rug.nl/
http://molgenis30.target.rug.nl/ (deprecated)
HFGP acceptance Fleur acceptance
195.169.23.231 public https://molgenis31.gcc.rug.nl/
https://molgenis31.target.rug.nl/ (deprecated)
to be recycled ( old Selenium test) - -
195.169.23.232 private https://molgenis32.gcc.rug.nl/
http://molgenis32.target.rug.nl/ (deprecated)
IBD (cleaned up data storage) Mariska/ Floris acceptance
195.169.23.233 public http://molgenis33.gcc.rug.nl/
http://molgenis33.target.rug.nl/ (deprecated)
CHD7 Acceptance Bart/Marieke? Acceptance
195.169.23.234 private http://molgenis34.gcc.rug.nl:8443/opal/
http://molgenis34.target.rug.nl:8443/opal/ (deprecated)
Opal Chao production
195.169.23.235 public https://molgenis35.gcc.rug.nl/
https://molgenis35.target.rug.nl/ (deprecated)
Recycled - -
195.169.23.236 private https://molgenis36.gcc.rug.nl/
https://molgenis36.target.rug.nl/ (deprecated)
LifeLines acceptance Dennis acceptance
195.169.23.237 public http://molgenis37.gcc.rug.nl:8080/xqtl_panacea/
http://molgenis37.target.rug.nl:8080/xqtl_panacea/ (deprecated)
WormQTL-HD Joeri production
195.169.23.238 public http://molgenis38.gcc.rug.nl:8080/xqtl_panacea/
http://molgenis38.gcc.rug.nl:8888
WormQTL beta/mirror and SAILS app Joeri test and production
195.169.23.239 public https://molgenis39.gcc.rug.nl/
https://molgenis39.target.rug.nl/ (deprecated)
RNA seq analysis Freerk / Niek / Mark / Fleur test
Server Access DNS Alias App Contact DTAP
195.169.23.240 - https://molgenis40.gcc.rug.nl/
https://molgenis40.target.rug.nl/ (deprecated)
IBD (cleaned up data storage) with 8GB RAM Floris/ Mariska Production
195.169.23.71 public https://molgenis41.gcc.rug.nl/
https://molgenis41.target.rug.nl/ (deprecated)
ARVC/D Bart production
195.169.23.72 public http://molgenis42.gcc.rug.nl/
http://molgenis42.target.rug.nl/
COL7A1 Bart / Marieke Acceptance
195.169.23.73 public http://molgenis43.gcc.rug.nl/ Gavin Bart / Fleur / Joeri acceptation
195.169.23.74 - https://molgenis44.gcc.rug.nl/
https://molgenis44.target.rug.nl/ (deprecated)
Recycled - -
195.169.23.75 private https://molgenis45.gcc.rug.nl/
https://molgenis45.target.rug.nl/ (deprecated)
GIDS Dennis production
195.169.23.76 public https://hfgp.bbmri.nl/
http://molgenis46.gcc.rug.nl/
http://molgenis46.target.rug.nl/ (deprecated)
Public HFGP server Mark Production
195.169.23.77 private http://molgenis47.gcc.rug.nl/
http://molgenis47.target.rug.nl/ (deprecated)
Genetics catalogue Marieke Production
195.169.23.78 private? http://molgenis48.gcc.rug.nl/
http://molgenis48.target.rug.nl/ (deprecated)
Diagnostic Platform for Clinical Genomics Joeri Acceptance
195.169.23.79 public https://molgenis49.gcc.rug.nl/
https://molgenis49.target.rug.nl/ (deprecated)
test BBMRI-NL catalogue promise integration Dennis acceptance
Server Access DNS Alias App Contact DTAP
195.169.23.80 public http://www.molgenis.org/jenkins/
http://molgenis50.gcc.rug.nl/jenkins/
http://molgenis50.target.rug.nl/jenkins/ (deprecated)
Jenkins Continuous Integration Server Dennis production
195.169.23.81 public http://www.chd7.org/
https://molgenis51.gcc.rug.nl/
https://molgenis51.target.rug.nl/ (deprecated)
CHD7 Bart Production
195.169.23.82 - https://molgenis52.gcc.rug.nl/
https://molgenis52.target.rug.nl (deprecated)
Recycled - -
195.169.23.83 public https://aip.fipapatients.org/
https://molgenis53.gcc.rug.nl/
https://molgenis53.target.rug.nl/ (deprecated)
AIP Mutation server Bart Production
195.169.23.84 public https://molgenis54.gcc.rug.nl
https://molgenis54.target.rug.nl (deprecated)
GENIUS database Freerk / Joeri Test
195.169.23.85 private http://molgenis55.gcc.rug.nl/
http://molgenis55.target.rug.nl/ (deprecated)
pathologie Marieke Production
195.169.23.86 public http://molgenis.org/ase
https://molgenis56.gcc.rug.nl/
https://molgenis56.target.rug.nl/ (deprecated)
ASE Mark Production
195.169.23.87 private http://molgenis57.gcc.rug.nl/
http://molgenis57.target.rug.nl/ (deprecated)
5GPM Bart & Joeri Acceptance
195.169.23.88 public? http://molgenis58.gcc.rug.nl/
http://molgenis58.target.rug.nl/ (deprecated)
Gene Network Juha Karjalainen accpetance
195.169.23.89 public? https://molgenis59.gcc.rug.nl/
https://molgenis59.target.rug.nl/ (deprecated)
Acceptance server for multiple projects Marieke Acceptance
Server Access DNS Alias App Contact DTAP
195.169.23.90 public http://niptric.eu/
http://nipper-calculator.eu/ (deprecated)
http://ppvfornipt.eu/ (deprecated)
https://molgenis60.gcc.rug.nl/
https://molgenis60.target.rug.nl/ (deprecated)
NIPD Fleur production
195.169.23.91 - https://molgenis61.gcc.rug.nl/
https://molgenis61.target.rug.nl/ (deprecated)
IBD private production Mariska Production
195.169.23.92 public http://molgenis62.gcc.rug.nl/
http://molgenis62.target.rug.nl/ (deprecated)
Various:
1. Restore Backup's
2. Use as test server for release
Apps Team test
195.169.23.93 public http://molgenis63.gcc.rug.nl/
http://molgenis63.target.rug.nl/ (deprecated)
Diagnostics platform demo server Bart Demo
195.169.23.94 private https://molgenis64.gcc.rug.nl/
https://molgenis64.target.rug.nl/ (deprecated)
5GPM Bart & Joeri Production
195.169.23.95 - https://molgenis65.gcc.rug.nl/
https://molgenis65.target.rug.nl/ (deprecated)
Family tree Marieke/ Sipko Nu nog in productie, straks recycle
195.169.23.96 public http://molgenis66.gcc.rug.nl:8080/xqtl_panacea/
http://molgenis66.target.rug.nl:8080/xqtl_panacea/ (deprecated)
WormQTL Joeri Production
195.169.23.97 public http://molgenis67.gcc.rug.nl:8080/xqtl/
http://molgenis67.target.rug.nl:8080/xqtl/ (deprecated)
xQTL Joeri Production
195.169.23.98 public http://www.palgaopenbaredatabank.nl/
https://molgenis68.gcc.rug.nl/
https://molgenis68.target.rug.nl/ (deprecated)
PALGA David / Dennis production
195.169.23.99 private https://molgenis69.gcc.rug.nl/
https://molgenis69.target.rug.nl/ (deprecated)
Chromosome6 Mark Production
Server Access DNS Alias App Contact DTAP
195.169.23.100 - https://molgenis70.gcc.rug.nl/ LifeCycle? Demo Sido - -
195.169.23.101 public https://molgenis71.gcc.rug.nl/
BiobankUniverse Chao Production
195.169.23.102 public https://molgenis72.gcc.rug.nl/
BiobankUniverse Chao Acceptance
195.169.23.103 private? https://molgenis73.gcc.rug.nl/
Consentabase (Pulmonary dept.) Marieke Acceptance
195.169.23.104 private? https://molgenis74.gcc.rug.nl/
SNP Visualization Diagnostics Mariska Test
195.169.23.105 private https://molgenis75.gcc.rug.nl/
Dev REST API test server Mariska Test
195.169.23.106 public https://cnvcatalogue.bbmri.nl/
https://molgenis76.gcc.rug.nl/
CNV catalogue Marieke/ Patrick Production
195.169.23.107 public https://molgenis77.gcc.rug.nl/
E-rare Mariska Production
195.169.23.108 public https://molgenis78.gcc.rug.nl/
BBMRI WP2 Mariska Test
195.169.23.109 private https://molgenis79.gcc.rug.nl/
Project Harm (Shiny web tool) Marieke/ Harm Productie
Server Access DNS Alias App Contact DTAP
195.169.23.110 public https://molgenis80.gcc.rug.nl/
RD connect 3.0 acceptance Mariska Acceptance
195.169.23.111 - https://molgenis81.gcc.rug.nl/
Temporarily used for testing error messages Marieke Test
195.169.23.112 public https://molgenis82.gcc.rug.nl/
E-rare Mariska acceptance
195.169.23.113 public https://molgenis83.gcc.rug.nl/ Molgenis research Joeri -
195.169.23.114 - https://molgenis84.gcc.rug.nl/
RD connect Mariska,David Acceptance
195.169.23.115 - https://molgenis85.gcc.rug.nl/
VKGL with version history Bart Demo
195.169.23.116 - https://molgenis86.gcc.rug.nl/ Recycled - -
195.169.23.117 - https://molgenis87.gcc.rug.nl/
Recycled - -
195.169.23.118 - https://molgenis88.gcc.rug.nl/ Lifecycle acceptance Marieke, David
195.169.23.119 - https://molgenis89.gcc.rug.nl/
LifeCycle? Demo Sido - -
Server Access DNS Alias App Contact DTAP
195.169.23.120 private https://molgenis90.gcc.rug.nl/
HSR production Marieke / Carin Production
195.169.23.121 private https://molgenis91.gcc.rug.nl/
HSR acceptance Marieke / Carin Acceptance
195.169.23.122 private https://molgenis92.gcc.rug.nl/
UMCG catalogue acceptance (on 4.1) Marieke / Carin Acceptance
195.169.23.123 public https://molgenis93.gcc.rug.nl/
TMF Mariska Acceptance
195.169.23.124 public https://molgenis94.gcc.rug.nl/
To be recycled - -
195.169.23.125 public https://molgenis95.gcc.rug.nl/
GoNL Mariska -
195.169.23.126 private https://molgenis96.gcc.rug.nl/
Samplesheets NGS_DNA/RNA Roan / Gerben / Marieke Acceptance
195.169.23.127 - https://molgenis97.gcc.rug.nl/
RD connect 4.1 acceptance -
195.169.23.128 private https://molgenis98.gcc.rug.nl/
UMCG catalogue production (on 4.1) Marieke / Carin Production
195.169.23.129 - https://molgenis99.gcc.rug.nl/
- - -
Server Access DNS Alias App Contact DTAP
195.169.22.225 - http://molgenis100.gcc.rug.nl/ Familiy tree Sipko/ Marieke production
195.169.22.226 public http://molgenis101.gcc.rug.nl/ BiobankConnect Chao test
195.169.22.227 public http://molgenis102.gcc.rug.nl/ LifeCycle? David Acceptance
195.169.22.228 public http://molgenis103.gcc.rug.nl/ VKGL Production Bart / Mariska
195.169.22.229 private http://molgenis104.gcc.rug.nl/ NGS_DNA_Bootstrapping Analysis Team Test
195.169.22.230 public http://molgenis105.gcc.rug.nl/ Nagios monitoring Sido/ Marieke production
195.169.22.231 public http://molgenis106.gcc.rug.nl/ Icinga monitoring Sido/ Marieke production
195.169.22.232 public http://molgenis107.gcc.rug.nl/ GDIO database Sipko/ Paul acceptance
195.169.22.233 public http://molgenis108.gcc.rug.nl/ Reserved for pathology Marieke -
195.169.22.234 public http://molgenis109.gcc.rug.nl/ BBMRI-ERIC Directory acceptance server David / Marieke Acceptatie
Server Access DNS Alias App Contact DTAP
195.169.22.235 public http://molgenis110.gcc.rug.nl/ Molgenis datamanagement server Marieke / Mariska / Paul Proiduction
195.169.22.236 public http://molgenis111.gcc.rug.nl/ Reserved for pathology Marieke -
195.169.22.237 - http://molgenis112.gcc.rug.nl/ VKGL acceptance Mariska Acceptance
195.169.22.238 public http://molgenis113.gcc.rug.nl/ MOLGENIS API tests Mariska,Connor Test
195.169.22.239 - https://molgenis114.gcc.rug.nl/
Reserved for BBMRI ERIC PoC app demo Biobankweek Mariska Acceptance
195.169.22.240 - https://molgenis115.gcc.rug.nl/
Cluster management Analysis team Test
195.169.22.241 public https://molgenis116.gcc.rug.nl/
Global Screening Array Dennis / Joeri Acceptance
Server Access DNS Alias App Contact DTAP
129.125.60.107 private http://es-portal.service.rug.nl Energysense Mark Production
129.125.60.43 private http://es-test-portal.service.rug.nl Energysense Mark Acceptance
85.90.73.204 private https://proof-acc.bbmri.nl/
https://tma-acc.bbmri.nl/
PROOF / TMA Marieke Acceptance
129.125.60.104 NA lobby.hpc.rug.nl proxy Pieter Production
129.125.60.106 NA foyer.hpc.rug.nl proxy Pieter Production
195.169.22.250 NA leela.gcc.rug.nl HPC UI Pieter Testing
195.169.22.6 NA spacewalk01.gcc.rug.nl repos Pieter Production
172.23.40.236 NA umcg-scheduler03 HPC scheduler Pieter Acceptance
172.23.40.232 NA umcg-scheduler02 HPC scheduler Pieter Production
129.125.60.76 NA cc-ds.hpc.rug.nl HPC UI Pieter Acceptance
195.169.22.7 NA spacewalk02.gcc.rug.nl repos Pieter Production
Last modified 17 hours ago Last modified on 2018-01-18T10:56:29+01:00